Howto

2018

API Examples

Graphics

Gain/loss frequency chromosomal ideogram

Michael, 2018-07-20: more ...

pgx Namespace

Since July 2017, the Progenetix project has a registered namespace prefix at EBI’s Miriam and identifiers.org.

Michael Baudis, 2018-05-10: more ...

NCIt Coding

Please see also the ICDOntoologies mapping project.

Michael Baudis, 2018-05-10: more ...

ICD-O 3 Coding

ICD coding of tumor samples

The Progenetix and arrayMap resources use the coding schemas of the _International Classification of Diseases in Oncology__ (3rd edition; “ICD-O 3”), to classify all biosamples for which experimental data is available. ou can get a list of all ICD-O 3 codes through the Progenetix API.

Michael Baudis, 2018-05-10: more ...

R Integration

Progenetix API and R

With the ability to access the status matrix directly, one easily can import the data into an R data frame:

Michael Baudis, 2018-05-10: more ...

Genome Coordinates

Gene Lists and Coordinates in Progenetix and arrayMap

For gene coordinates, we use a mapping of the genes’ maximum CDR as derived from mapping resources.

Michael Baudis, 2018-05-08: more ...

Coordinate use for Beacon Queries

2018-04-04: more ...

Generating a publication statistics plot using the Progenetix API

2018-04-01: more ...