2012-03-23: more ...
2012-03-23: more ...
2012-03-26: more ...
2014-04-01: more ...
For gene coordinates, we use a mapping of the genes’ maximum CDR as derived from mapping resources.
Michael Baudis 2018-05-08: more ...
With the ability to access the status matrix directly, one easily can import the data into an R data frame:
Michael Baudis 2018-05-10: more ...
The Progenetix and arrayMap resources use the coding schemas of the _International Classification of Diseases in Oncology__ (3rd edition; “ICD-O 3”), to classify all biosamples for which experimental data is available. ou can get a list of all ICD-O 3 codes through the Progenetix API.
Michael Baudis 2018-05-10: more ...
Since July 2017, the Progenetix project has a registered namespace prefix at EBI’s Miriam and identifiers.org.
Michael Baudis 2018-05-10: more ...
Michael 2018-07-20: more ...
The Progenetix Jekyll template modifies the standard Jekyll file structure.
@mbaudis 2019-03-14: more ...
The YAML headers are necessary to process the Markdown (or HTML) files in the page collections. The Progenetix Jekyll template uses standard Jekyll headers, but also adds some additional parameters.
@mbaudis 2019-03-14: more ...
In an ideal scenario, your Github served website could be build locally, with the same output structure and layout.
@mbaudis 2019-03-14: more ...
The publication data pages have now been implemented using JavaScript and calls to the Progenetix data API.
@mbaudis 2019-06-07: more ...
2019-06-27: more ...
The SVGs of the callset heatmap plots will now have labels linked to the sample
search script, using the datasetIds and callsets.id parameters. Therefore,
one can now easily explore the quality of a callset from the heatmap, w/o having
to copy/paste/search.
@mbaudis 2019-09-24: more ...
The response element of the Beacon+ interface now contains a link for displaying the matched variants e.g. of e.g. a CNV query in the UCSC genome browser.
@mbaudis 2019-10-14: more ...
The Beacon+ implementation of the GA4GH Beacon protocol has become a part of the ELIXIR Beacon Network, an expanding Beacon service to query multiple Beacon resources and aggregate their query results.
@mbaudis 2020-01-20: more ...
After some hiatus we have re-started the work on the Progenetix API. The updated version now has functions for accessing sample data using simple filters.
Examples are e.g. the retrieval of sample data in JSON or tabular format, or the counting of samples matching a given parameter.
@mbaudis 2020-01-22: more ...
2020-04-03: more ...
2020-04-03: more ...
| {S}[B] Status [i] | implemented |
|---|---|
| Provenance | |
| Used by |
2020-04-03: more ...