Bycon::pgx_cmd_modify_biosamples.py Python Code Documentation

The script uses the -f parameter with a start-anchored prefixed ontology id to retrieve samples, and then to update the prefix-determined biocharacteristics.

This isn’t a “general use” function but requires some diligent use …

Changing this to make use of direct Python data manipulation using the standard bycon query generation/exacution would be possible; however, the greater execution transparency seems to be an advantage for now.

Examples

Links

2020-06-20