Bycon::pgxport.py Python Code Documentation

This program allows you to select biosamples from any of the datsets, and to export the sample data in the format of

Queries are handled through the standard bycon query aggregation. While some simple parameters for data selection exist / may be added, the best way to filter the data is through providing a JSON string with scoped queries, as if run directly against the MongoDB collections.

CAVE: The ne version of the arguments parser makes it easier to copy/paste MongoDB terminal queries into a queries argument:

Please see the examples below.

Examples

Links

2020-06-03