byconplus.md Python Code Documentation

Bycon - a Python-based environment for the Beacon v2 genomics API

Examples
Examples for v2 endpoints
{
  "biosamples": {
    "progenetix": [
      {
        "id": "PGX_AM_BS_HNSCC-GSF-an-10394",
        "individual_id": "PGX_IND_HNSCC-GSF-an-10394",
        "age_at_collection": { "age": "P50Y" },
        "biocharacteristics": [
          {
            "type" : { "id" : "icdot-C10.9", "label" : "Oropharynx" }
          },
          {
            "type" : { "id" : "icdom-80703", "label" : "Squamous cell carcinoma, NOS" }
          },
          {
            "type" : { "id" : "NCIT:C8181", "label" : "Oropharyngeal Squamous Cell Carcinoma" }
          }
        ],
        "geo_provenance" : {
          "label" : "Oberschleissheim, Germany",
          "precision" : "city",
          "city" : "Oberschleissheim",
          "country" : "Germany",
          "latitude" : 48.25,
          "longitude" : 11.56
        },
        ...
Custom (yet)

Links

2020-10-20