Old style linking has been deprecated - please follow the API information!
Links to Progenetix should always use the base "www.progenetix.org", never specific IP-addresses (which are bound to change). Also, many pages/image files may become moved or renamed. Below are some notes.
http://www.progenetix.org/cgi-bin/pgLocusScorer.cgi?multiRegionMatch=1p36:1
lists entities with a gain involving 1p36 1=gain, -1=loss, 9=any one can use GP annotation (e.g. chr2:15,998,134-16,004,580:1 fuer MYCN)
Values/ranking is calculated on the fly per case (we could use a score matrix, but then we would be limited to defined intervals).
... can be linked directly; e.g.
http://www.progenetix.org/I84903/
will link to ICD-O 8490/3 (Signet ring cell carcinoma).As well,
http://www.progenetix.org/I84903/chr8.pdf
http://www.progenetix.org/I84903/chr8.png
http://www.progenetix.org/I84903/histoplot.pdf
http://www.progenetix.org/I84903/histoplot.png
link to the respective plots in web (PNG) and print (PDF) format.
http://www.progenetix.org/P20013897/
... etc. However, there are many information pages for publications without available data/plots, e.g.
http://www.progenetix.org/P19627613/
http://www.progenetix.org/LC32/
... e.g. links to Larynx. However, although the codes are based on ICD locus topography, the code selection is a bit arbitrary and follows the amount of available data (e.g. most soft tissue tumors are mapped to "connective and soft tissue" instead of specific loci - upper arm, ...).
... are defined as mix of ICD-O entities and locus (e.g. any carcinoma of the breast tissue => "Ca.: breast ca."). Since the annotation may change, one shouldn't use hard links to these.
