Linking - (deprecated))

Linking is now deprecated - please follow the API information!


Most of the information below is outdated or may become so soon.

Links to Progenetix should always use the base "www.progenetix.org", never specific IP-addresses (which are bound to change). Also, many pages/image files may become moved or renamed. Below are some notes.

1. Locus Score

http://www.progenetix.org/cgi-bin/pgLocusScorer.cgi?multiRegionMatch=1p36:1

 lists entities with a gain involving 1p36 
 1=gain, -1=loss, 9=any
 one can use GP annotation (e.g. chr2:15,998,134-16,004,580:1 fuer MYCN)

Values/ranking is calculated on the fly per case (we could use a score matrix, but then we would be limited to defined intervals).

2. ICD-O entities

... can be linked directly; e.g.

http://www.progenetix.org/I84903/
will link to ICD-O 8490/3 (Signet ring cell carcinoma).As well,

http://www.progenetix.org/I84903/chr8.pdf
http://www.progenetix.org/I84903/chr8.png
http://www.progenetix.org/I84903/histoplot.pdf
http://www.progenetix.org/I84903/histoplot.png

link to the respective plots in web (PNG) and print (PDF) format.

3. PMIDs

http://www.progenetix.org/P20013897/

... etc. However, there are many information pages for publications without available data/plots, e.g.

http://www.progenetix.org/P19627613/

4. Loci

http://www.progenetix.org/LC32/

... e.g. links to Larynx. However, although the codes are based on ICD locus topography, the code selection is a bit arbitrary and follows the amount of available data (e.g. most soft tissue tumors are mapped to "connective and soft tissue" instead of specific loci - upper arm, ...).

5. Clinical entities

... are defined as mix of ICD-O entities and locus (e.g. any carcinoma of the breast tissue => "Ca.: breast ca."). Since the annotation may change, one shouldn't use hard links to these.

2012-03-23