Pages tagged "API"

API::api.cgi Perl Code Documentation

2020-01-06: more ...

Articles with Genome Profiles in Progenetix

This page lists all publications for whioch the Progenetix database contains sample-specific genome profiles.

2020-01-06: more ...

Coordinate use for Beacon Queries

2020-01-06: more ...

Coordinate use for Beacon Queries

2020-01-06: more ...

BeaconPlus Changes

This page lists changes for the Beacon+ implementation of the “Beacon” genomics API.

2019-09-30: more ...

Data Pages

The Progenetix site slowly transitions away from the legacy interface, with the aim to provide more functionality through an open API as well as frontend pages implemented through this (Markdown, Jekyll…) based documentation system.

@mbaudis 2019-06-03: more ...

ICD-O 3 Coding

ICD coding of tumor samples

The Progenetix and arrayMap resources use the coding schemas of the _International Classification of Diseases in Oncology__ (3rd edition; “ICD-O 3”), to classify all biosamples for which experimental data is available. ou can get a list of all ICD-O 3 codes through the Progenetix API.

Michael Baudis 2018-05-10: more ...

ICD-O 3 Coding

ICD coding of tumor samples

The Progenetix and arrayMap resources use the coding schemas of the _International Classification of Diseases in Oncology__ (3rd edition; “ICD-O 3”), to classify all biosamples for which experimental data is available. ou can get a list of all ICD-O 3 codes through the Progenetix API.

Michael Baudis 2018-05-10: more ...

Previous API Examples (Deprecated)

Michael 2018-07-20: more ...

Previous API Notes (Deprecated)

2014-04-01: more ...

Progenetix Publication Collection

The current page lists articles describing whole genome screening (WGS, WES, aCGH, cCGH) experiments in cancer, registered in the Progenetix publication collection.

2020-01-06: more ...

Generating a publication statistics plot using the Progenetix API

2020-01-06: more ...

Generating a publication statistics plot using the Progenetix API

2020-01-06: more ...

Publication Details

2020-01-06: more ...

Publication Pages

The SVGs of the callset heatmap plots will now have labels linked to the sample search script, using the datasetIds and callsets.id parameters. Therefore, one can now easily explore the quality of a callset from the heatmap, w/o having to copy/paste/search.

@mbaudis 2019-09-24: more ...

Publication Pages

The publication data pages have now been implemented using JavaScript and calls to the Progenetix data API.

@mbaudis 2019-06-07: more ...

R Integration

Progenetix API and R

With the ability to access the status matrix directly, one easily can import the data into an R data frame:

Michael Baudis 2018-05-10: more ...

R Integration

Progenetix API and R

With the ability to access the status matrix directly, one easily can import the data into an R data frame:

Michael Baudis 2018-05-10: more ...

Sample Details

2020-01-06: more ...

User File Uploads

2020-01-06: more ...

pgx Namespace

Since July 2017, the Progenetix project has a registered namespace prefix at EBI’s Miriam and identifiers.org.

Michael Baudis 2018-05-10: more ...

pgx Namespace

Since July 2017, the Progenetix project has a registered namespace prefix at EBI’s Miriam and identifiers.org.

Michael Baudis 2018-05-10: more ...