2020-06-03: more ...
This page lists all publications for whioch the Progenetix database contains sample-specific genome profiles.
2020-06-03: more ...
2020-06-03: more ...
This page lists changes for the Beacon+ implementation of the “Beacon” genomics API.
2019-09-30: more ...
Wherever possible, data annotation in Progenetix uses {S}[B] OntologyClass
objects for categorical values, with CURIEs as id values. So far, the
Progenetix databases had used pubmed: for PubMed identifiers and ncit:
for NCI Metathesaurus (Neoplasm) ids.
@mbaudis 2020-03-30: more ...
The Progenetix site slowly transitions away from the legacy interface, with the aim to provide more functionality through an open API as well as frontend pages implemented through this (Markdown, Jekyll…) based documentation system.
@mbaudis 2019-06-03: more ...
The Progenetix and arrayMap resources use the coding schemas of the _International Classification of Diseases in Oncology__ (3rd edition; “ICD-O 3”), to classify all biosamples for which experimental data is available. ou can get a list of all ICD-O 3 codes through the Progenetix API.
Michael Baudis 2018-05-10: more ...
Michael 2018-07-20: more ...
2014-04-01: more ...
After some hiatus we have re-started the work on the Progenetix API. The updated version now has functions for accessing sample data using simple filters.
Examples are e.g. the retrieval of sample data in JSON or tabular format, or the counting of samples matching a given parameter.
@mbaudis 2020-01-22: more ...
The current page lists articles describing whole genome screening (WGS, WES, aCGH, cCGH) experiments in cancer, registered in the Progenetix publication collection.
2020-06-03: more ...
2020-06-03: more ...
The publication data pages have now been implemented using JavaScript and calls to the Progenetix data API.
@mbaudis 2019-06-07: more ...
The SVGs of the callset heatmap plots will now have labels linked to the sample
search script, using the datasetIds and callsets.id parameters. Therefore,
one can now easily explore the quality of a callset from the heatmap, w/o having
to copy/paste/search.
@mbaudis 2019-09-24: more ...
With the ability to access the status matrix directly, one easily can import the data into an R data frame:
Michael Baudis 2018-05-10: more ...
2020-06-03: more ...
2020-06-03: more ...