2020-04-03: more ...
This page lists all publications for whioch the Progenetix database contains sample-specific genome profiles.
2020-04-03: more ...
The response element of the Beacon+ interface now contains a link for displaying the matched variants e.g. of e.g. a CNV query in the UCSC genome browser.
@mbaudis 2019-10-14: more ...
This page lists changes for the Beacon+ implementation of the “Beacon” genomics API.
2019-09-30: more ...
The Progenetix / Beaconplus query model utilises the GA4GH core data model for genomic and (biomedical, procedural) queries and data delivery.
2019-06-26: more ...
Wherever possible, data annotation in Progenetix uses {S}[B] OntologyClass
objects for categorical values, with CURIEs as id values. So far, the
Progenetix databases had used pubmed: for PubMed identifiers and ncit:
for NCI Metathesaurus (Neoplasm) ids.
@mbaudis 2020-03-30: more ...
The Progenetix site slowly transitions away from the legacy interface, with the aim to provide more functionality through an open API as well as frontend pages implemented through this (Markdown, Jekyll…) based documentation system.
@mbaudis 2019-06-03: more ...
The Progenetix Jekyll template modifies the standard Jekyll file structure.
@mbaudis 2019-03-14: more ...
The YAML headers are necessary to process the Markdown (or HTML) files in the page collections. The Progenetix Jekyll template uses standard Jekyll headers, but also adds some additional parameters.
@mbaudis 2019-03-14: more ...
In an ideal scenario, your Github served website could be build locally, with the same output structure and layout.
@mbaudis 2019-03-14: more ...
The Progenetix database provides an overview of copy number abnormalities in human cancer.
2020-04-03: more ...
The current page lists articles describing whole genome screening (WGS, WES, aCGH, cCGH) experiments in cancer, registered in the Progenetix publication collection.
2020-04-03: more ...
2019-06-27: more ...
2020-04-03: more ...
The SVGs of the callset heatmap plots will now have labels linked to the sample
search script, using the datasetIds and callsets.id parameters. Therefore,
one can now easily explore the quality of a callset from the heatmap, w/o having
to copy/paste/search.
@mbaudis 2019-09-24: more ...
The publication data pages have now been implemented using JavaScript and calls to the Progenetix data API.
@mbaudis 2019-06-07: more ...
2020-04-03: more ...
2020-04-03: more ...