Pages tagged "identifiers"

pgx namespace and persistant identifiers

While the pgx prefix had been registered in 2017 with identifiers.org we recently changed the resolver and target mappings on the Progenetix server. This went hand-in-hand with the generation of unique & persistant identifiers for the main data items.

2020-10-09: more ...

Publication DB Criteria

Progenetix publication collection: Which scientific publications are included?

The Progenetix Publication DB contains articles describing whole genome screening (WGS, WES, aCGH, cCGH1) experiments in cancer. Genomic information about the analyzed cancer samples is extracted from these publications to generate cancer mutation data, with a focus on copy number abnormalities (CNV / CNA).

  1. Whole-genome screening techniques: 

2021-06-17: more ...

Progenetix project Namespace

Since July 2017, the Progenetix project has a registered namespace prefix at EBI’s identifiers.org.

This prefix will gradually be used to implement a REST syntax with stable endpoints for all Progenetix resources (e.g. arraymap.org, cnvar.org …), as well as to guide to our code mapping resources.

Michael Baudis 2018-05-10: more ...

CURIE Prefix Remapping - NCIT & PMID

Wherever possible, data annotation in Progenetix uses {S}[B] OntologyClass objects for categorical values, with CURIEs as id values. So far, the Progenetix databases had used pubmed: for PubMed identifiers and ncit: for NCI Metathesaurus (Neoplasm) ids.

@mbaudis 2020-03-30: more ...