CURIE Prefix Remapping - NCIT & PMID

Wherever possible, data annotation in Progenetix uses {S}[B] OntologyClass objects for categorical values, with CURIEs as id values. So far, the Progenetix databases had used pubmed: for PubMed identifiers and ncit: for NCI Metathesaurus (Neoplasm) ids.

@mbaudis 2020-03-30: more ...

Diagnosis Coding

The Progenetix resource utilizes standardized diagnostic coding systems, with a move towards hierarchical ontologies. As part of the coding process we have developed and provide several code mapping resources through repositories, the Progenetix website and APIs.

@mbaudis 2021-05-06: more ...

Ontology Term Contributions

The group is an active contributor to several public ontologies, both through mapping efforts (ICDOntologies, icdot2uberon) and by requesting terms relevant for genomic and metadata e.g. for EFO.

@mbaudis 2021-01-14: more ...