CURIE Prefix Remapping - NCIT & PMID

Wherever possible, data annotation in Progenetix uses {S}[B] OntologyClass objects for categorical values, with CURIEs as id values. So far, the Progenetix databases had used pubmed: for PubMed identifiers and ncit: for NCI Metathesaurus (Neoplasm) ids.

@mbaudis 2020-03-30: more ...

NCIt coding of tumor samples

• based on NCIt neoplasm core
• first implementation of NCIt concepts mapping in January 2017, for a subset of arrayMap samples
• currently working on the ICDOntoologies mapping project

@mbaudis 2018-05-10: more ...

Ontology Term Contributions

The group is an active contributor to several public ontologies, both through mapping efforts (ICDOntologies, icdot2uberon) and by requesting terms relevant for genomic and metadata e.g. for EFO.

@mbaudis 2021-01-14: more ...