User File Uploads

Segment File
 
Load File

Uploaded Files

FileSamplesVariants

Example File

File format

Data has to be submitted as tab-delimited segment files. The table below is an excerpt of such a file which. While the header values are not being interpreted, the column order has to be followed:

  1. sample
    • please use only word characters, underscores, dashes
    • the sample value is used for splitting multi-sample files into their individual profiles
  2. chro
    • the reference chromosome
    • 1-22, X, Y (23 => X; 24 => Y)
  3. start
    • base positions according to the used reference genome
  4. end
    • as above
  5. mean
    • the value of the segment
    • 0-centered
    • segments not passing the calling thresholds (fallback 0.15, -0.15 are being filtered out)
    • one can use dummy values (e.g. 1 for gains, -1 for losses)
  6. probes
    • the number of array probes, call bins in the segment
    • fallback filter removes
    • optional (no filter on empty values)
 
sample chro start end mean probes
GSM276857 1 911484 70249410 0.0649 1031
GSM276857 1 70342585 70482327 1.0774 5
GSM276857 1 70483105 227040336 -0.0163 3231
GSM276857 1 227056783 227155097 -0.6500 9
GSM276857 1 227212352 248655165 0.0438 386
GSM276857 10 223755 2351737 0.0901 33
GSM276857 10 2400053 2403369 -0.7802 5
GSM276857 12 114256 71562233 0.0036 1468
GSM276857 12 71641830 132924025 -0.0040 1211
GSM276857 17 601219 82630699 0.0690 968
GSM276857 18 159885 80087573 -0.0175 1835
GSM276857 19 390341 58234565 0.1674 363
GSM276857 20 167044 64240906 0.0340 1100
GSM276857 21 18842097 46680243 -0.0098 822
GSM276857 22 15438402 50242600 0.1506 326
GSM276857 23 1698590 155616443 -0.1495 1203
GSM276856 1 911484 70342585 -0.0820 1032
GSM276856 1 70648419 248015727 -0.1102 3619
GSM276856 2 110819 240942225 -0.1204 5271
GSM276856 3 119131 73981757 -0.1176 1675