The Progenetix Resource Documentation provides information and links related to the Progenetix cancer genome resource and the related Progenetix code repositories contains projects, such as data conversion scripts, ontology mappings and code for the Beacon+ project.
Biosample schema used for exporting Progenetix data has been adjusted with respect to representation of “bio-“classifications. The previous
biocharacteristics list parameter has been deprecated and its previous content is now expressed in1:
Here, “PGX” means that the attribute is part of the Phenopackets standard, while “pgx” labels it as specific to Progenetix. ↩
@mbaudis 2021-08-31: more ...
2021-08-03: more ...
For testing the rapidly evolving Beacon v2 API, we have now implemented more paths/endpoints which mostly conform to the brand new & still “flexible” v2.0.0-draft.4 version. Please check the documentation and examples.
@mbaudis 2021-07-02: more ...
In “forward-looking” conformity with the Beacon v2
API, the JSON attributes of the API responses has been changed from
camelCased. Please adjust your code, where necessary.
@mbaudis 2021-07-01: more ...
This article provides an overview of recent changes and additions to the Progenetix database and the services provided through the resource.
2021-06-30: more ...
The Progenetix resource’s API utilizes the
bycon framework for data query and
delivery and basically represents a custom implementation of the Beacon API.
@mbaudis 2021-05-05: more ...
As one of the drivers of the Beacon protocol and to drive the Beacon v2 protocol process we have now started the documentation of Beacon v2 endpoints which are supported in Progenetix as part of the implementations-v2 project:
2021-04-30: more ...
For requests & support, please use standard Github procedures such as pull requests or issues, or contact the developers.